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+//=====================================================
+// File : blitz_interface.hh
+// Author : L. Plagne <laurent.plagne@edf.fr)>
+// Copyright (C) EDF R&D, lun sep 30 14:23:30 CEST 2002
+// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
+//=====================================================
+//
+// This program is free software; you can redistribute it and/or
+// modify it under the terms of the GNU General Public License
+// as published by the Free Software Foundation; either version 2
+// of the License, or (at your option) any later version.
+//
+// This program is distributed in the hope that it will be useful,
+// but WITHOUT ANY WARRANTY; without even the implied warranty of
+// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+// GNU General Public License for more details.
+// You should have received a copy of the GNU General Public License
+// along with this program; if not, write to the Free Software
+// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA 02111-1307, USA.
+//
+#ifndef BLITZ_INTERFACE_HH
+#define BLITZ_INTERFACE_HH
+
+#include <blitz/blitz.h>
+#include <blitz/array.h>
+#include <blitz/vector-et.h>
+#include <blitz/vecwhere.h>
+#include <blitz/matrix.h>
+#include <vector>
+
+BZ_USING_NAMESPACE(blitz)
+
+template<class real>
+class blitz_interface{
+
+public :
+
+ typedef real real_type ;
+
+ typedef std::vector<real> stl_vector;
+ typedef std::vector<stl_vector > stl_matrix;
+
+ typedef blitz::Array<real, 2> gene_matrix;
+ typedef blitz::Array<real, 1> gene_vector;
+// typedef blitz::Matrix<real, blitz::ColumnMajor> gene_matrix;
+// typedef blitz::Vector<real> gene_vector;
+
+ static inline std::string name() { return "blitz"; }
+
+ static void free_matrix(gene_matrix & A, int N){}
+
+ static void free_vector(gene_vector & B){}
+
+ static inline void matrix_from_stl(gene_matrix & A, stl_matrix & A_stl){
+ A.resize(A_stl[0].size(),A_stl.size());
+ for (int j=0; j<A_stl.size() ; j++){
+ for (int i=0; i<A_stl[j].size() ; i++){
+ A(i,j)=A_stl[j][i];
+ }
+ }
+ }
+
+ static inline void vector_from_stl(gene_vector & B, stl_vector & B_stl){
+ B.resize(B_stl.size());
+ for (int i=0; i<B_stl.size() ; i++){
+ B(i)=B_stl[i];
+ }
+ }
+
+ static inline void vector_to_stl(gene_vector & B, stl_vector & B_stl){
+ for (int i=0; i<B_stl.size() ; i++){
+ B_stl[i]=B(i);
+ }
+ }
+
+ static inline void matrix_to_stl(gene_matrix & A, stl_matrix & A_stl){
+ int N=A_stl.size();
+ for (int j=0;j<N;j++){
+ A_stl[j].resize(N);
+ for (int i=0;i<N;i++)
+ A_stl[j][i] = A(i,j);
+ }
+ }
+
+ static inline void matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N)
+ {
+ firstIndex i;
+ secondIndex j;
+ thirdIndex k;
+ X = sum(A(i,k) * B(k,j), k);
+ }
+
+ static inline void ata_product(const gene_matrix & A, gene_matrix & X, int N)
+ {
+ firstIndex i;
+ secondIndex j;
+ thirdIndex k;
+ X = sum(A(k,i) * A(k,j), k);
+ }
+
+ static inline void aat_product(const gene_matrix & A, gene_matrix & X, int N)
+ {
+ firstIndex i;
+ secondIndex j;
+ thirdIndex k;
+ X = sum(A(i,k) * A(j,k), k);
+ }
+
+ static inline void matrix_vector_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N)
+ {
+ firstIndex i;
+ secondIndex j;
+ X = sum(A(i,j)*B(j),j);
+ }
+
+ static inline void atv_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N)
+ {
+ firstIndex i;
+ secondIndex j;
+ X = sum(A(j,i) * B(j),j);
+ }
+
+ static inline void axpy(const real coef, const gene_vector & X, gene_vector & Y, int N)
+ {
+ firstIndex i;
+ Y = Y(i) + coef * X(i);
+ //Y += coef * X;
+ }
+
+ static inline void copy_matrix(const gene_matrix & source, gene_matrix & cible, int N){
+ cible = source;
+ //cible.template operator=<gene_matrix>(source);
+// for (int i=0;i<N;i++){
+// for (int j=0;j<N;j++){
+// cible(i,j)=source(i,j);
+// }
+// }
+ }
+
+ static inline void copy_vector(const gene_vector & source, gene_vector & cible, int N){
+ //cible.template operator=<gene_vector>(source);
+ cible = source;
+ }
+
+};
+
+#endif