From f0238cfb6997c4acfc2bd200de7295f3fa36968f Mon Sep 17 00:00:00 2001
From: Stanislaw Halik <sthalik@misaki.pl>
Date: Sun, 3 Mar 2019 21:09:10 +0100
Subject: don't index Eigen

---
 eigen/bench/btl/libs/gmm/gmm_interface.hh | 144 ------------------------------
 1 file changed, 144 deletions(-)
 delete mode 100644 eigen/bench/btl/libs/gmm/gmm_interface.hh

(limited to 'eigen/bench/btl/libs/gmm/gmm_interface.hh')

diff --git a/eigen/bench/btl/libs/gmm/gmm_interface.hh b/eigen/bench/btl/libs/gmm/gmm_interface.hh
deleted file mode 100644
index 3ea303c..0000000
--- a/eigen/bench/btl/libs/gmm/gmm_interface.hh
+++ /dev/null
@@ -1,144 +0,0 @@
-//=====================================================
-// Copyright (C) 2008 Gael Guennebaud <gael.guennebaud@inria.fr>
-//=====================================================
-//
-// This program is free software; you can redistribute it and/or
-// modify it under the terms of the GNU General Public License
-// as published by the Free Software Foundation; either version 2
-// of the License, or (at your option) any later version.
-//
-// This program is distributed in the hope that it will be useful,
-// but WITHOUT ANY WARRANTY; without even the implied warranty of
-// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-// GNU General Public License for more details.
-// You should have received a copy of the GNU General Public License
-// along with this program; if not, write to the Free Software
-// Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA  02111-1307, USA.
-//
-#ifndef GMM_INTERFACE_HH
-#define GMM_INTERFACE_HH
-
-#include <gmm/gmm.h>
-#include <vector>
-
-using namespace gmm;
-
-template<class real>
-class gmm_interface {
-
-public :
-
-  typedef real real_type ;
-
-  typedef std::vector<real>  stl_vector;
-  typedef std::vector<stl_vector > stl_matrix;
-
-  typedef gmm::dense_matrix<real> gene_matrix;
-  typedef stl_vector gene_vector;
-
-  static inline std::string name( void )
-  {
-    return "gmm";
-  }
-
-  static void free_matrix(gene_matrix & A, int N){
-    return ;
-  }
-
-  static void free_vector(gene_vector & B){
-    return ;
-  }
-
-  static inline void matrix_from_stl(gene_matrix & A, stl_matrix & A_stl){
-    A.resize(A_stl[0].size(),A_stl.size());
-
-    for (int j=0; j<A_stl.size() ; j++){
-      for (int i=0; i<A_stl[j].size() ; i++){
-        A(i,j) = A_stl[j][i];
-      }
-    }
-  }
-
-  static inline void vector_from_stl(gene_vector & B, stl_vector & B_stl){
-    B = B_stl;
-  }
-
-  static inline void vector_to_stl(gene_vector & B, stl_vector & B_stl){
-    B_stl = B;
-  }
-
-  static inline void matrix_to_stl(gene_matrix & A, stl_matrix & A_stl){
-    int N=A_stl.size();
-
-    for (int j=0;j<N;j++){
-      A_stl[j].resize(N);
-      for (int i=0;i<N;i++){
-        A_stl[j][i] = A(i,j);
-      }
-    }
-  }
-
-  static inline void matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N){
-    gmm::mult(A,B, X);
-  }
-
-  static inline void transposed_matrix_matrix_product(const gene_matrix & A, const gene_matrix & B, gene_matrix & X, int N){
-    gmm::mult(gmm::transposed(A),gmm::transposed(B), X);
-  }
-
-  static inline void ata_product(const gene_matrix & A, gene_matrix & X, int N){
-    gmm::mult(gmm::transposed(A),A, X);
-  }
-
-  static inline void aat_product(const gene_matrix & A, gene_matrix & X, int N){
-    gmm::mult(A,gmm::transposed(A), X);
-  }
-
-  static inline void matrix_vector_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N){
-    gmm::mult(A,B,X);
-  }
-
-  static inline void atv_product(gene_matrix & A, gene_vector & B, gene_vector & X, int N){
-    gmm::mult(gmm::transposed(A),B,X);
-  }
-
-  static inline void axpy(const real coef, const gene_vector & X, gene_vector & Y, int N){
-    gmm::add(gmm::scaled(X,coef), Y);
-  }
-
-  static inline void axpby(real a, const gene_vector & X, real b, gene_vector & Y, int N){
-    gmm::add(gmm::scaled(X,a), gmm::scaled(Y,b), Y);
-  }
-
-  static inline void copy_matrix(const gene_matrix & source, gene_matrix & cible, int N){
-    gmm::copy(source,cible);
-  }
-
-  static inline void copy_vector(const gene_vector & source, gene_vector & cible, int N){
-    gmm::copy(source,cible);
-  }
-
-  static inline void trisolve_lower(const gene_matrix & L, const gene_vector& B, gene_vector & X, int N){
-    gmm::copy(B,X);
-    gmm::lower_tri_solve(L, X, false);
-  }
-
-  static inline void partial_lu_decomp(const gene_matrix & X, gene_matrix & R, int N){
-    gmm::copy(X,R);
-    std::vector<int> ipvt(N);
-    gmm::lu_factor(R, ipvt);
-  }
-
-  static inline void hessenberg(const gene_matrix & X, gene_matrix & R, int N){
-    gmm::copy(X,R);
-    gmm::Hessenberg_reduction(R,X,false);
-  }
-
-  static inline void tridiagonalization(const gene_matrix & X, gene_matrix & R, int N){
-    gmm::copy(X,R);
-    gmm::Householder_tridiagonalization(R,X,false);
-  }
-
-};
-
-#endif
-- 
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