don't index Eigen

1 files changed, 0 insertions, 206 deletions

diff --git a/eigen/Eigen/src/SparseCore/SparseColEtree.h b/eigen/Eigen/src/SparseCore/SparseColEtree.h
deleted file mode 100644
index ebe02d1..0000000
--- a/eigen/Eigen/src/SparseCore/SparseColEtree.h
+++ /dev/null
@@ -1,206 +0,0 @@
-// This file is part of Eigen, a lightweight C++ template library
-// for linear algebra.
-//
-// Copyright (C) 2012 Désiré Nuentsa-Wakam <desire.nuentsa_wakam@inria.fr>
-//
-// This Source Code Form is subject to the terms of the Mozilla
-// Public License v. 2.0. If a copy of the MPL was not distributed
-// with this file, You can obtain one at http://mozilla.org/MPL/2.0/.
-
-
-/* 
- 
- * NOTE: This file is the modified version of sp_coletree.c file in SuperLU 
- 
- * -- SuperLU routine (version 3.1) --
- * Univ. of California Berkeley, Xerox Palo Alto Research Center,
- * and Lawrence Berkeley National Lab.
- * August 1, 2008
- *
- * Copyright (c) 1994 by Xerox Corporation.  All rights reserved.
- *
- * THIS MATERIAL IS PROVIDED AS IS, WITH ABSOLUTELY NO WARRANTY
- * EXPRESSED OR IMPLIED.  ANY USE IS AT YOUR OWN RISK.
- *
- * Permission is hereby granted to use or copy this program for any
- * purpose, provided the above notices are retained on all copies.
- * Permission to modify the code and to distribute modified code is
- * granted, provided the above notices are retained, and a notice that
- * the code was modified is included with the above copyright notice.
- */
-#ifndef SPARSE_COLETREE_H
-#define SPARSE_COLETREE_H
-
-namespace Eigen {
-
-namespace internal {
-
-/** Find the root of the tree/set containing the vertex i : Use Path halving */ 
-template<typename Index, typename IndexVector>
-Index etree_find (Index i, IndexVector& pp)
-{
-  Index p = pp(i); // Parent 
-  Index gp = pp(p); // Grand parent 
-  while (gp != p) 
-  {
-    pp(i) = gp; // Parent pointer on find path is changed to former grand parent
-    i = gp; 
-    p = pp(i);
-    gp = pp(p);
-  }
-  return p; 
-}
-
-/** Compute the column elimination tree of a sparse matrix
-  * \param mat The matrix in column-major format. 
-  * \param parent The elimination tree
-  * \param firstRowElt The column index of the first element in each row
-  * \param perm The permutation to apply to the column of \b mat
-  */
-template <typename MatrixType, typename IndexVector>
-int coletree(const MatrixType& mat, IndexVector& parent, IndexVector& firstRowElt, typename MatrixType::StorageIndex *perm=0)
-{
-  typedef typename MatrixType::StorageIndex StorageIndex;
-  StorageIndex nc = convert_index<StorageIndex>(mat.cols()); // Number of columns
-  StorageIndex m = convert_index<StorageIndex>(mat.rows());
-  StorageIndex diagSize = (std::min)(nc,m);
-  IndexVector root(nc); // root of subtree of etree 
-  root.setZero();
-  IndexVector pp(nc); // disjoint sets 
-  pp.setZero(); // Initialize disjoint sets 
-  parent.resize(mat.cols());
-  //Compute first nonzero column in each row 
-  firstRowElt.resize(m);
-  firstRowElt.setConstant(nc);
-  firstRowElt.segment(0, diagSize).setLinSpaced(diagSize, 0, diagSize-1);
-  bool found_diag;
-  for (StorageIndex col = 0; col < nc; col++)
-  {
-    StorageIndex pcol = col;
-    if(perm) pcol  = perm[col];
-    for (typename MatrixType::InnerIterator it(mat, pcol); it; ++it)
-    { 
-      Index row = it.row();
-      firstRowElt(row) = (std::min)(firstRowElt(row), col);
-    }
-  }
-  /* Compute etree by Liu's algorithm for symmetric matrices,
-          except use (firstRowElt[r],c) in place of an edge (r,c) of A.
-    Thus each row clique in A'*A is replaced by a star
-    centered at its first vertex, which has the same fill. */
-  StorageIndex rset, cset, rroot;
-  for (StorageIndex col = 0; col < nc; col++) 
-  {
-    found_diag = col>=m;
-    pp(col) = col; 
-    cset = col; 
-    root(cset) = col; 
-    parent(col) = nc; 
-    /* The diagonal element is treated here even if it does not exist in the matrix
-     * hence the loop is executed once more */ 
-    StorageIndex pcol = col;
-    if(perm) pcol  = perm[col];
-    for (typename MatrixType::InnerIterator it(mat, pcol); it||!found_diag; ++it)
-    { //  A sequence of interleaved find and union is performed 
-      Index i = col;
-      if(it) i = it.index();
-      if (i == col) found_diag = true;
-      
-      StorageIndex row = firstRowElt(i);
-      if (row >= col) continue; 
-      rset = internal::etree_find(row, pp); // Find the name of the set containing row
-      rroot = root(rset);
-      if (rroot != col) 
-      {
-        parent(rroot) = col; 
-        pp(cset) = rset; 
-        cset = rset; 
-        root(cset) = col; 
-      }
-    }
-  }
-  return 0;  
-}
-
-/** 
-  * Depth-first search from vertex n.  No recursion.
-  * This routine was contributed by Cédric Doucet, CEDRAT Group, Meylan, France.
-*/
-template <typename IndexVector>
-void nr_etdfs (typename IndexVector::Scalar n, IndexVector& parent, IndexVector& first_kid, IndexVector& next_kid, IndexVector& post, typename IndexVector::Scalar postnum)
-{
-  typedef typename IndexVector::Scalar StorageIndex;
-  StorageIndex current = n, first, next;
-  while (postnum != n) 
-  {
-    // No kid for the current node
-    first = first_kid(current);
-    
-    // no kid for the current node
-    if (first == -1) 
-    {
-      // Numbering this node because it has no kid 
-      post(current) = postnum++;
-      
-      // looking for the next kid 
-      next = next_kid(current); 
-      while (next == -1) 
-      {
-        // No more kids : back to the parent node
-        current = parent(current); 
-        // numbering the parent node 
-        post(current) = postnum++;
-        
-        // Get the next kid 
-        next = next_kid(current); 
-      }
-      // stopping criterion 
-      if (postnum == n+1) return; 
-      
-      // Updating current node 
-      current = next; 
-    }
-    else 
-    {
-      current = first; 
-    }
-  }
-}
-
-
-/**
-  * \brief Post order a tree 
-  * \param n the number of nodes
-  * \param parent Input tree
-  * \param post postordered tree
-  */
-template <typename IndexVector>
-void treePostorder(typename IndexVector::Scalar n, IndexVector& parent, IndexVector& post)
-{
-  typedef typename IndexVector::Scalar StorageIndex;
-  IndexVector first_kid, next_kid; // Linked list of children 
-  StorageIndex postnum; 
-  // Allocate storage for working arrays and results 
-  first_kid.resize(n+1); 
-  next_kid.setZero(n+1);
-  post.setZero(n+1);
-  
-  // Set up structure describing children
-  first_kid.setConstant(-1); 
-  for (StorageIndex v = n-1; v >= 0; v--) 
-  {
-    StorageIndex dad = parent(v);
-    next_kid(v) = first_kid(dad); 
-    first_kid(dad) = v; 
-  }
-  
-  // Depth-first search from dummy root vertex #n
-  postnum = 0; 
-  internal::nr_etdfs(n, parent, first_kid, next_kid, post, postnum);
-}
-
-} // end namespace internal
-
-} // end namespace Eigen
-
-#endif // SPARSE_COLETREE_H